PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00713.1.g00190.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 558aa    MW: 59816.2 Da    PI: 5.1797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00713.1.g00190.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30310369159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Zpz_sc00713.1.g00190.1.sm.mkhc 310 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 369
                                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31295371IPR003657WRKY domain
SuperFamilySSF1182902.88E-27303371IPR003657WRKY domain
PROSITE profilePS5081128.529305371IPR003657WRKY domain
SMARTSM007741.4E-37310370IPR003657WRKY domain
PfamPF031061.0E-26311369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEAEREE DDRSNGGDGD GRSKDGEMDK EEGQLKKHGE ALKLETKEEK  60
VVEVVVDQGG KGSKKEIKFR TQPGDAMEED KQLAEEGEGD DESDGAETRA EDKHVVEDAG  120
NRNAGDNHTA MEQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQQTD  180
EPKEPEVFLS LGAAAGVRAE PKLKRKEQAT PRRLSLSSDD TDDGKEDLGL SLSLGTYDED  240
KLEAGHDRDD ATAAGDGREK GYALLESSKL GRPPPPAGDL VAAGITSQSV NPANRKTRVS  300
VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP GCPVRKQVQR CLEDMSILVT  360
TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTSSSASIS DVGGATAAPP YLSPYLLNSA  420
SHHSAASSLL SPPPSIYGAS GLQHLNLFGH SSSSVLSQQA PHLGKYPWSS PSALGTSSGL  480
TTGGKRPFWS TGSGDEKTTT LPDNVGAVMS DPSKFSMAIA TAINNFMGKE GQTTGGKDGE  540
SSSKSNNKWG VVESLPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21297373176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452890.10.0hypothetical protein SORBIDRAFT_04g034440
TrEMBLC5XSY10.0C5XSY1_SORBI; Putative uncharacterized protein Sb04g034440
STRINGSb04g034440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-51WRKY DNA-binding protein 9